12. PM4NGS available genomes¶
A set of genomes are available for download with the required files already configured. If the genome name is used, PM4NGS will include in the alignment notebook a cell to download, uncompress the genome file and create the aligner indexes.
Note
We recommend to move our of the first project the generated genome folder data/{{genome_name}}/ to a different folder so it can be reutilized for other projects. This will avoid the extra time for the index creation and will save space.
| Name | Organism | Source |
|---|---|---|
| hg38 | Homo sapiens | UCSC |
| hg19 | Homo sapiens | UCSC |
| mm10 | Mus musculus (Mouse) | UCSC |
| mm9 | Mus musculus (Mouse) | UCSC |
| NC_000913.3 | Escherichia coli strain K12, MG1655 | NCBI |
| canFam3 | Canis familiaris (Dog) | UCSC |
| dm6 | Drosophila melanogaster | UCSC |
| TAIR10 | Arabidopsis thaliana | NCBI |