11.2. BWA Genomic Indexes¶
The genome.fa file should be copied to the genome directory.
localhost:~> mkdir genome
localhost:~> cd genome
localhost:~> mkdir BWA
localhost:~> cd BWA
localhost:~> cwl-runner --no-container https://github.com/ncbi/cwl-ngs-workflows-cbb/blob/master/tools/tools/BWA/bwa-index.cwl --sequences ../genome.fa
localhost:~> cd ..
localhost:~> tree
.
├── BWA
│ ├── genome.fa
│ ├── genome.fa.amb
│ ├── genome.fa.ann
│ ├── genome.fa.bwt
│ ├── genome.fa.pac
│ └── genome.fa.sa
└── genome.fa
1 directory, 7 files