11.2. BWA Genomic Indexes

The genome.fa file should be copied to the genome directory.

localhost:~> mkdir genome
localhost:~> cd genome
localhost:~> mkdir BWA
localhost:~> cd BWA
localhost:~> cwl-runner --no-container https://github.com/ncbi/cwl-ngs-workflows-cbb/blob/master/tools/tools/BWA/bwa-index.cwl --sequences ../genome.fa
localhost:~> cd ..
localhost:~> tree
.
├── BWA
│   ├── genome.fa
│   ├── genome.fa.amb
│   ├── genome.fa.ann
│   ├── genome.fa.bwt
│   ├── genome.fa.pac
│   └── genome.fa.sa
└── genome.fa

1 directory, 7 files