1. Installation¶
1.1. Requirements¶
- Poppler (https://poppler.freedesktop.org/)
1.2. PM4NGS with Conda/BioConda (Recommended)¶
1.2.1. Conda installation¶
Conda should be already installed and configured using these commands:
localhost:~> wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
localhost:~> sh Miniconda3-latest-Linux-x86_64.sh
localhost:~> conda config --add channels defaults
localhost:~> conda config --add channels bioconda
localhost:~> conda config --add channels conda-forge
1.2.2. PM4NGS conda installation¶
PM4NGS should be installed in a Conda virtual environment named pm4ngs:
localhost:~> conda create -n pm4ngs pm4ngs
1.2.3. PM4NGS conda env activation¶
For activating the conda env:
localhost:~> conda activate pm4ngs
localhost:~> pm4ngs-create -v
PM4NGS version: 0.1.dev0+d20200819
1.3. PM4NGS with Python virtual environment¶
1.3.1. PM4NGS python installation¶
Python 3.6 or above should be installed.
localhost:~> python3 -m venv pm4ngs_venv
localhost:~> source pm4ngs_venv/bin/activate
(pm4ngs_venv) localhost:~> pip install wheel
(pm4ngs_venv) localhost:~> pip install pm4ngs
1.3.2. PM4NGS python env activation¶
For activating the virtual env:
localhost:~> source pm4ngs_venv/bin/activate
(pm4ngs_venv) localhost:~> pm4ngs-create -v
PM4NGS version: 0.0.4